aurekaresearch

Perform structure-conditioned antibody sequence generation with SolubleMPNN as one atomic Design Agent skill while preserving fixe...

Use when an agent or workflow needs objective antibody pI, TAP, and CDR liability filtering

Fast epitope identification and hotspot coverage analysis using distance-based contact detection. Identifies which antigen residue...

Generate one-step CDR mutation proposals from ESM-2 deep-mutational-scan log-likelihood ratios, then pass those proposals to the n...

aurekaresearch/opendde-harness

aurekaresearch/opendde-harness

Look up protein structures in the RCSB PDB through its public JSON APIs (no key): search entries by text or sequence, read an entr...

Select a concise Top-K from a bounded post-refold shortlist through holistic evidence-based judgment.

Find and read biomedical literature through NCBI E-utilities and Europe PMC (no key): search PubMed for papers on a target, antibo...

Analyze protein-ligand or protein-protein interactions from a single structure file with PLIP in the OpenDDE Harness compute servi...

Look up protein sequences and annotations in UniProt through its public REST API (no key): find an accession by gene or protein na...

Get current weather and forecasts (no API key required).