albert-ying/autonomous-lab/comparative-genomics
Claude Code and agent skill by albert-ying/autonomous-lab
Trust tier 3
- community
Source check pending
Checking that the SKILL.md file is still in the repository.
Install
npx vskill@latest install albert-ying/autonomous-lab/comparative-genomicsSKILL.md
Comparative Genomics Skill
When to Use
Use for comparing gene content, synteny, and functional modules across genomes.
Standard Workflow
- Predict genes with Prodigal
- Identify orthologous clusters with OrthoFinder or similar
- Annotate clusters with functional databases (COG, KEGG, etc.)
- Filter for conserved gene clusters present across all genomes
- Identify co-evolving gene modules
Key Decisions
- Use KEGG/COG annotations for functional characterization
- Filter for clusters present in all genomes for core analysis
- Use GFF annotations when available for annotation transfer
Security
- Security scanPassed, 95 of 100Pattern checks on the skill's files.
- Model reviewPassed
Quality evaluation
- Task evaluationNot runNo evaluation yet. Run one in Skill Studio.
Source
- SKILL.md in the repositoryChecking.autolab/acquired_skills/comparative-genomics/SKILL.md
Popularity
- 7-day trend score
- 5
Not refreshed yet.
Works with
Any agent vskill installs to: 56 targets in all. These 39 have a page on this site.
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