albert-ying/autonomous-lab/phylogenetics

Claude Code and agent skill by albert-ying/autonomous-lab

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Checking that the SKILL.md file is still in the repository.

Install

npx vskill@latest install albert-ying/autonomous-lab/phylogenetics

SKILL.md

Phylogenetics Skill

When to Use

Use for phylogenetic tree reconstruction from sequence alignments.

Standard Workflow

  1. Align sequences with MUSCLE, MAFFT, or ClustalW
  2. Build trees with FastTree, RAxML, or IQ-TREE
  3. Visualize and annotate trees

Key Decisions

  • Choose appropriate substitution model
  • Use bootstrapping for branch support
  • FastTree for speed, RAxML/IQ-TREE for accuracy

Security

  • Security scanPassed, 100 of 100Pattern checks on the skill's files.
  • Model reviewPassed

Quality evaluation

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Source

Popularity

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Works with

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