albert-ying/autonomous-lab/snpeff-annotation
Claude Code and agent skill by albert-ying/autonomous-lab
Trust tier 3
- community
Source check pending
Checking that the SKILL.md file is still in the repository.
Install
npx vskill@latest install albert-ying/autonomous-lab/snpeff-annotationSKILL.md
SnpEff Annotation Skill
When to Use
Use when annotating variants with functional impact predictions (gene, effect, impact).
Standard Workflow
- Build SnpEff database from reference genome + GFF: configure snpEff.config, then
snpEff build -gff3 -v genome_name - Annotate VCF:
snpEff ann genome_name variants.vcf > annotated.vcf - Parse annotations from ANN field in VCF
Key Decisions
- For de novo assembled genomes, build a custom SnpEff database using Prokka annotations
- Impact levels: HIGH, MODERATE, LOW, MODIFIER
- Parse ANN field: Allele|Annotation|Impact|Gene_Name|...
Security
- Security scanPassed, 90 of 100Pattern checks on the skill's files.
- Model reviewPassed
Quality evaluation
- Task evaluationNot runNo evaluation yet. Run one in Skill Studio.
Source
- SKILL.md in the repositoryChecking.autolab/acquired_skills/snpeff-annotation/SKILL.md
Popularity
- Repository stars
- 14
- Repository forks
- 6
- 7-day trend score
- 19
Stars and forks are for the whole GitHub repository, not this skill alone. Not refreshed yet.
Works with
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