name: chroma description: Open-source embedding database for RAG — store embeddings, vector search, metadata filtering. Simple API, scales from notebook to production. version: 1.0.0 author: hermes-CCC (ported from Hermes Agent by NousResearch) license: MIT metadata: hermes: tags: [RAG, Chroma, Vector-Database, Embeddings, Semantic-Search, Open-Source] related_skills: []

Chroma

Purpose

• Use this skill to store embeddings and perform semantic retrieval for RAG systems.
• Prefer Chroma when you want a simple local developer experience with an easy Python API.
• Chroma works well for notebooks, prototypes, local apps, and moderate production deployments.
• It supports metadata filtering, server mode, and pluggable embedding functions.

Install

pip install chromadb sentence-transformers

• Add any extra embedding provider packages you need, such as the OpenAI SDK.

Basic Setup

import chromadb
client = chromadb.PersistentClient(path="./chroma_db")

• PersistentClient stores data on disk.
• It is a good default for local development and single-node setups.

Create a Collection

collection = client.create_collection(name="docs")

• Use descriptive collection names like docs, papers, tickets, or kb_chunks.
• A collection is the logical container for your embeddings and payload metadata.

Add Documents

• Minimal add call:

collection.add(
    documents=["Chroma is useful for local RAG.", "Vector search retrieves semantically similar text."],
    metadatas=[{"source": "note1"}, {"source": "note2"}],
    ids=["doc-1", "doc-2"],
)

• Required arrays must align by index.
• Keep ids stable if you plan to update or delete records later.

Query

results = collection.query(
    query_texts=["How do I store embeddings for RAG?"],
    n_results=5,
)
print(results["documents"])
print(results["metadatas"])

• query_texts=['...'] is the most common path when Chroma is managing embeddings for you.
• Start with n_results=5 or 10 for most retrieval experiments.

Basic Collection Lifecycle

• Create collection
• Add documents
• Query for nearest neighbors
• Update documents when content changes
• Delete stale records

Get or Create

• For idempotent startup flows, prefer get_or_create_collection:

collection = client.get_or_create_collection(name="docs")

• This is helpful in services that initialize storage on boot.

Embedding Functions

• Chroma supports multiple embedding strategies.
• Common choices include:
• DefaultEmbeddingFunction
• SentenceTransformerEmbeddingFunction
• OpenAIEmbeddingFunction

Default Embedding Function

from chromadb.utils.embedding_functions import DefaultEmbeddingFunction
embedding_fn = DefaultEmbeddingFunction()
collection = client.get_or_create_collection(
    name="default-embeddings",
    embedding_function=embedding_fn,
)

• The default function is convenient for quick experiments.
• For production, you usually want to control the embedding model explicitly.

SentenceTransformers Embedding Function

from chromadb.utils.embedding_functions import SentenceTransformerEmbeddingFunction
embedding_fn = SentenceTransformerEmbeddingFunction(
    model_name="sentence-transformers/all-MiniLM-L6-v2",
)
collection = client.get_or_create_collection(
    name="st-docs",
    embedding_function=embedding_fn,
)

• This is a good choice for local semantic search with no external API dependency.

OpenAI Embedding Function

from chromadb.utils.embedding_functions import OpenAIEmbeddingFunction
embedding_fn = OpenAIEmbeddingFunction(
    api_key="YOUR_API_KEY",
    model_name="text-embedding-3-small",
)
collection = client.get_or_create_collection(
    name="openai-docs",
    embedding_function=embedding_fn,
)

• Use this when you want consistent hosted embeddings across environments.
• Track model versions because embedding changes can invalidate similarity behavior.

Add Structured Documents

collection.add(
    documents=[
        "Retrieval augmented generation combines retrieval with generation.",
        "Chroma collections can store metadata for filtering.",
    ],
    metadatas=[
        {"source": "paper1", "section": "intro", "year": 2024},
        {"source": "paper1", "section": "methods", "year": 2024},
    ],
    ids=["paper1-intro", "paper1-methods"],
)

• Include source, section, title, author, or timestamp metadata if you need filtered retrieval.

Metadata Filtering

• Filter by metadata with where:

results = collection.query(
    query_texts=["What does the paper say about filtering?"],
    n_results=5,
    where={"source": "paper1"},
)

• Example requested pattern:
• where={'source': 'paper1'}

• Metadata filters are critical for multi-tenant or source-restricted RAG.

Full Text Search

• Chroma also supports document-side text filtering with where_document.
• The commonly used operator form is:

results = collection.query(
    query_texts=["database"],
    n_results=5,
    where_document={"$contains": "keyword"},
)

• Some examples on the internet simplify this idea informally as where_document={'...': 'keyword'}.
• In practice, use the explicit operator form your installed Chroma version documents.

Update Documents

• Update existing records by ID:

collection.update(
    ids=["doc-1"],
    documents=["Chroma stores embeddings persistently for local RAG systems."],
    metadatas=[{"source": "note1", "updated": True}],
)

• Use stable IDs so updates remain deterministic.

Delete Documents

collection.delete(ids=["doc-2"])

• You can also delete by filter in many workflows:

collection.delete(where={"source": "note1"})

• Deletes are useful for document re-indexing and source cleanup jobs.

Inspect Data

• Fetch records directly:

items = collection.get(ids=["doc-1"])
print(items)

• Use this for debugging chunk contents, metadata shape, and embedding lifecycle issues.

HTTP Client for Server Mode

• Chroma can run as a server and be accessed over HTTP.
• Python client example:

import chromadb
client = chromadb.HttpClient(host="localhost", port=8000)
collection = client.get_or_create_collection(name="docs")

• This is useful when multiple apps need to share one Chroma instance.

Docker Server

• Start a server with Docker:

docker run -p 8000:8000 chromadb/chroma

• Pair that with chromadb.HttpClient(host='localhost', port=8000) from Python.
• For persistent data in Docker, mount a volume rather than relying on container-local storage.

Retrieval Design Tips

• Chunk documents before indexing.
• Keep chunk size and overlap consistent during experiments.
• Store source metadata so retrieved chunks can be traced back to originals.
• Log your embedding model name and collection schema.

Chroma Strengths

• Very easy local setup
• Clean Python API
• Good fit for notebook and single-service workflows
• Flexible embedding function support

Chroma Limitations

• It is simpler than some production-first vector engines.
• Large-scale distributed deployments may need a more specialized backend.
• You should benchmark real workloads before using it as a high-scale production default.

Common Failure Modes

• Empty search results:
• confirm documents were added
• confirm the embedding function is configured as expected
• lower filtering constraints

• Embedding mismatch:
• avoid changing embedding models inside the same collection without re-indexing
• document the embedding function used for each collection

• Duplicate records:
• choose deterministic IDs from source path plus chunk index
• upsert or update intentionally instead of re-adding blind

• Server connectivity issues:
• verify the Docker container is running
• confirm localhost:8000 is reachable
• switch from PersistentClient to HttpClient only when appropriate

Recommended Workflow

• Start local with PersistentClient.
• Use sentence-transformers for quick offline prototypes.
• Add metadata filters early if you know you need scoped retrieval.
• Move to server mode when multiple apps or services need shared access.

When To Use This Skill

• You are building a local RAG system.
• You need an easy vector store API inside Python.
• You want metadata-aware retrieval without a heavy infrastructure stack.
• You need a bridge from notebook experimentation to a small production deployment.

Quick Reference

• Install: pip install chromadb sentence-transformers
• Local client: chromadb.PersistentClient(path="./chroma_db")
• Add docs: collection.add(documents=[...], metadatas=[...], ids=[...])
• Query: collection.query(query_texts=["..."], n_results=5)
• Metadata filter: where={"source": "paper1"}
• Document text filter: where_document={"$contains": "keyword"}
• Server client: chromadb.HttpClient(host="localhost", port=8000)
• Docker: docker run -p 8000:8000 chromadb/chroma