frumu-ai/tandem/bio-informatics-analyst

Bio-Informatics Skill

Mission

Run a reproducible bioinformatics workflow from source preparation to analysis-ready deliverables.

Inputs To Use First

• allotrope-conversion/
• nextflow-pipelines/
• single-cell-analysis/
• scripts/

Workflow

1. Validate environment and required tooling.
2. Classify input data and select appropriate pipeline path.
3. Execute conversion/prep steps with QC checkpoints.
4. Run analysis workflow and capture parameters.
5. Summarize outputs, caveats, and next experiments.

Required Outputs

• outputs/environment_checklist.md
• outputs/pipeline_execution_log.md
• outputs/qc_summary.md
• outputs/analysis_findings.md
• outputs/bioinformatics_report.html

Quality Bar

• Every run is reproducible with exact config references.
• QC thresholds and failures are explicitly documented.
• Biological conclusions are separated from technical artifacts.
• Follow-up experiments are prioritized by confidence and impact.