hannesill/m4/mimic-meld-24h-raw

-- ------------------------------------------------------------------
-- Title: Model for End-Stage Liver Disease (MELD) score
-- This query extracts the MELD-Na score for the first 24 hours of
-- each ICU stay. MELD uses logarithmic transformations of creatinine,
-- bilirubin, and INR with a conditional sodium adjustment.
-- ------------------------------------------------------------------
 
-- Reference for MELD:
--    Kamath PS et al. "A model to predict survival in patients with
--    end-stage liver disease." Hepatology. 2001;33(2):464-470.
--    Kim WR et al. "Hyponatremia and mortality among patients on the
--    liver-transplant waiting list." NEJM. 2008;359(10):1018-1026.
 
-- Adapted from mimic-code meld.sql
 
WITH cohort AS (
    SELECT
        ie.subject_id,
        ie.hadm_id,
        ie.stay_id,
        labs.creatinine_max,
        labs.bilirubin_total_max,
        labs.inr_max,
        labs.sodium_min,
        r.dialysis_present AS rrt
    FROM mimiciv_icu.icustays AS ie
    LEFT JOIN mimiciv_derived.first_day_lab AS labs
        ON ie.stay_id = labs.stay_id
    LEFT JOIN mimiciv_derived.first_day_rrt AS r
        ON ie.stay_id = r.stay_id
)
 
, score AS (
    SELECT
        subject_id, hadm_id, stay_id,
        rrt, creatinine_max, bilirubin_total_max, inr_max, sodium_min,
        CASE
            WHEN sodium_min IS NULL THEN 0.0
            WHEN sodium_min > 137 THEN 0.0
            WHEN sodium_min < 125 THEN 12.0
            ELSE 137.0 - sodium_min
        END AS sodium_score,
        CASE
            WHEN rrt = 1 OR creatinine_max > 4.0
            THEN (0.957 * LN(4))
            WHEN creatinine_max < 1
            THEN (0.957 * LN(1))
            ELSE 0.957 * COALESCE(LN(creatinine_max), LN(1))
        END AS creatinine_score,
        CASE
            WHEN bilirubin_total_max < 1
            THEN 0.378 * LN(1)
            ELSE 0.378 * COALESCE(LN(bilirubin_total_max), LN(1))
        END AS bilirubin_score,
        CASE
            WHEN inr_max < 1
            THEN (1.120 * LN(1) + 0.643)
            ELSE (1.120 * COALESCE(LN(inr_max), LN(1)) + 0.643)
        END AS inr_score
    FROM cohort
)
 
, score2 AS (
    SELECT
        subject_id, hadm_id, stay_id,
        rrt, creatinine_max, bilirubin_total_max, inr_max, sodium_min,
        creatinine_score, sodium_score, bilirubin_score, inr_score,
        CASE
            WHEN (creatinine_score + bilirubin_score + inr_score) > 4
            THEN 40.0
            ELSE ROUND(TRY_CAST(creatinine_score + bilirubin_score + inr_score AS DECIMAL), 1) * 10
        END AS meld_initial
    FROM score
)
 
SELECT
    subject_id, hadm_id, stay_id
    , CASE
        WHEN meld_initial > 11
        THEN meld_initial + 1.32 * sodium_score - 0.033 * meld_initial * sodium_score
        ELSE meld_initial
    END AS meld
FROM score2
;