iowarp/clio-agent-marketplace/audit-dataset

You are already running this skill in the delegated child. Complete the assigned inspection directly; do not recursively delegate it.

The assignment must identify the source bundle and should identify the question or audit scope. If the source is unreadable, report the actual access problem. Treat it as read-only input even when writes are technically permitted. Save notes, code and outputs outside it, usually in the Agent workspace state at <workspace_state>/datasets/<key>/, resolved from CLIO_AGENT_WORKSPACE_STATE_DIR, or another permitted output directory.

1. Load onboard-dataset and inspect the files needed for the assignment. For

phenotyping, use phenotyping-onboarding-checks for scientific checks. Scripts, cards and schemas are optional aids. Adapt or replace them when assumptions do not fit; an unfamiliar export version is not a blanket blocker.

1. Keep uncertain treatment meanings, units, calibration and identity mappings

explicit. Return these questions to the parent rather than guessing or changing source data. Continue checks that do not depend on their answers.

1. Check calculations and outputs against source observations, counts and join

behavior. Process completion or a passing example schema alone does not establish scientific validity. Do not convert a whole dataset merely to fill a required set of tables. The parent owns final presentation.

1. Return a concise account of inspected scope, evidence, findings, limitations,

questions, paths of any notes/code/outputs, and checks with their results. For reusable code, include its invocation and dependencies. If no loader or views were needed, say so. Identify any specific unfinished work.

The parent checks the evidence supporting its answer: inspecting a sample, repeating a calculation, comparing counts or rerunning selected code when warranted. A mandatory second execution of the entire pipeline is not required. A partial result must be labelled accurately. Continue until the assigned scope is satisfied or a concrete access or interpretation dependency remains.