jeremy-allen/claude-skills/writing-tidyverse-r

Writing Tidyverse R

This skill covers modern tidyverse patterns for R 4.3+ and dplyr 1.1+, style guidelines, and migration from legacy patterns.

Core Principles

1. Use modern tidyverse patterns - Prioritize dplyr 1.1+ features, native pipe, and current APIs
2. Write readable code first - Optimize only when necessary
3. Follow tidyverse style guide - Consistent naming, spacing, and structure

Pipe Usage

Always use native pipe `|>` instead of magrittr `%>%`

R 4.3+ provides all needed features. See pipe-examples.md for usage patterns.

Join Syntax (dplyr 1.1+)

Use `join_by()` instead of character vectors for joins

Modern join syntax supports:

• Equality joins: join_by(company == id)
• Inequality joins: join_by(company == id, year >= since)
• Rolling joins: join_by(company == id, closest(year >= since))

See join-examples.md for complete patterns.

Multiple Match Handling

Use multiple and unmatched arguments for quality control:

• multiple = "error" - Expect 1:1 matches
• multiple = "all" - Allow multiple matches explicitly
• unmatched = "error" - Ensure all rows match

Data Masking vs Tidy Selection

Understand the difference:

• Data masking functions: arrange(), filter(), mutate(), summarise()
• Tidy selection functions: select(), relocate(), across()

Key patterns:

• Use {{}} (embrace) for function arguments
• Use .data[[]] for character vectors
• Use across() for multiple columns

See data-masking-examples.md for patterns.

Modern Grouping and Column Operations

Use `.by` for per-operation grouping (dplyr 1.1+)

This replaces the old group_by() |> ... |> ungroup() pattern.

Additional modern operations:

• pick() - Column selection inside data-masking functions
• across() - Apply functions to multiple columns
• reframe() - Multi-row summaries

See grouping-examples.md for complete examples.

String Manipulation with stringr

Use stringr over base R string functions

Benefits:

• Consistent str_ prefix
• String-first argument order
• Pipe-friendly and vectorized

See stringr-examples.md for common patterns and base R equivalents.

Style Guide Essentials

Object Names

• Use snake_case for all names
• Variable names = nouns, function names = verbs
• Avoid dots except for S3 methods

Good: day_one, calculate_mean, user_data Avoid: DayOne, calculate.mean, userData

Spacing and Layout

See style-examples.md for proper spacing and pipe formatting.

Naming and Arguments

• Use snake_case for variables and functions
• Prefix non-standard arguments with . (e.g., .data, .by)

Anti-Patterns to Avoid

Legacy Patterns

Performance Anti-Patterns

• Don't grow objects in loops - Pre-allocate or use purrr
• Don't use `sapply()` - Type-unstable, use map_*() instead

See anti-patterns.md for examples of what to avoid and correct alternatives.

Migration Reference

Base R to Modern Tidyverse

Old to New Tidyverse Patterns

See migration-examples.md for complete migration patterns.

source: Sarah Johnson's gist https://gist.github.com/sj-io/3828d64d0969f2a0f05297e59e6c15ad