monarch-initiative/mechmaker/source-queue

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Checking that the SKILL.md file is still in the repository.

Triage the sources that feed DaTMech curation in curation/source_queue.tsv: add candidates, check licenses and access, rank, and decide what to adopt next. Use when asked what to curate from, whether a database or corpus is usable, or to plan bulk seeding.

Install

npx vskill@latest install monarch-initiative/mechmaker/source-queue

SKILL.md

The source queue

curation/source_queue.tsv ranks the sources that feed curation. The columns are explained in curation/README.md.

Adding a candidate

For each source, find out and write down:

  • What it gives. Which record sections it could fill, and for roughly

how many records. Measure with a sample, not a guess.

  • License. Read the actual terms. Write UNKNOWN if you could not find

them. Never infer a license from a site's look.

  • Access. API, bulk download, or pages only. Rate limits. Whether

identifiers are stable.

  • Grounding. Does it use CURIEs the schema accepts, or does it need

mapping?

Ranking

Rank by value per unit of effort, and say why in notes. A small, clean, openly licensed source that fills a required section beats a large one that needs mapping.

Adopting

A source is ADOPTED when merged code or a written procedure uses it. The pull request that adds the ingest code also changes the row. Ingest code writes through write_validated_record, runs dry by default, and records a history entry for each bulk change.

Bulk-seeded records start as DRAFT. Their evidence must still validate. Seeding does not excuse a record from the evidence rules.

Security

  • Security scanPassed, 90 of 100Pattern checks on the skill's files.
  • Model reviewPassed

Quality evaluation

  • Task evaluationNot runNo evaluation yet. Run one in Skill Studio.

Source

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