version: "1.0.0" name: bionemo-phage-generation description: Use when starting, planning, or resuming BioNeMo and Evo 2 bacteriophage genome generation or design for phage therapy research, including host-specific candidates for antibiotic-resistant infections and antimicrobial resistance (AMR); locates or acquires a compatible recipe checkout before implementation-specific work. metadata: author: NVIDIA <bionemofeedback@nvidia.com>

BioNeMo Phage Generation

This portable entrypoint locates a compatible recipe checkout and transfers work to its recipe-local implementation package.

Select mode and locate the recipe

Use interactive unless the user requests batch. Preserve the user's original request and constraints.

Prefer a checkout supplied by the user, then a compatible nearby checkout. Compatibility requires:

• $BIONEMO_RECIPES/recipes/evo2_phage_gen/VERSION >= 2.5;
• $BIONEMO_RECIPES/recipes/evo2_phage_gen/skills/bionemo-phage-design/SKILL.md.

If none is available, acquire https://github.com/NVIDIA-BioNeMo/bionemo-recipes or another compatible revision without overwriting an existing checkout. Record the selected checkout and recipe roots and, when available, its revision.

Make a durable handoff

Build this handoff prompt before changing sessions:

Continue the Evo 2 phage-design request in MODE=<interactive|batch>.
Original request and constraints: <verbatim user request and durable constraints>.
Selected checkout root: <absolute checkout root>.
Selected recipe root: <absolute recipe root>.
Selected revision: <commit or revision>.

Start the next session in the recorded recipe root, not this portable skill's installation path, and invoke the local bionemo-phage-design controller using the harness-supported mechanism.