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PublishedNovember 8, 2026 at 07:34 PM

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name: ontoindex-guide description: 'Consult for OntoIndex tool families, resource URIs, graph schema, and bounded Cypher reference.' metadata: version: "1.0.1"

OntoIndex Reference

Read ontoindex-navigation first; then choose the exploring, debugging, impact-analysis, pr-review, refactoring, or cli recipe skill for the task. Pass repo: '<repo>' in every tool call.

Family	Tools and actions
Discovery	`discover`: repos, routes, tools, packs, groups, sync, help, tool_contract; `manage({action: "diagnose", ...})`
Retrieval	`search`: semantic, cypher, repomap; `inspect({action: "explore", ...})`, `inspect({action: "module", ...})`
Context	`inspect`: context, evidence, shape, ipc; `inspect({action: "related", ...})`
Edit safety	`impact`: symbol, batch, route, diff; `audit({action: "safe_edit_check", ...})`, `audit({action: "can_delete", ...})`
Verification	`audit({action: "verify_diff", ...})`, `audit({action: "review_diff", ...})`, `impact({action: "diff_impact", ...})`, `audit({action: "test_gap", ...})`, `audit({action: "pre_commit_audit", ...})`
Index lifecycle	`manage({action: "ensure_fresh", ...})`, `manage({action: "analyze_job", jobId, job_action: "status", ...})` (coordinate refresh through navigation)
Audits/docs	`audit`, `docs`
Session/refactoring	`manage`; `refactor`: rename (preview only), replace, sandbox

Resources: ontoindex://repos; ontoindex://repo/{name}/context, /schema, /processes, /clusters, and /process/{processName} (append each suffix to the repository URI).

Nodes include File, Folder, Function, Class, Interface, Method, CodeElement, Community, Process, and language-specific types such as Struct, Enum, Property, and Constructor. Symbols expose name, filePath, startLine, and endLine; consult the schema resource for type-specific properties. All edges use the CodeRelation table with a type property (and confidence, reason, step). Edge types include CONTAINS, DEFINES, CALLS, IMPORTS, EXTENDS, IMPLEMENTS, HAS_METHOD, HAS_PROPERTY, ACCESSES, METHOD_OVERRIDES, METHOD_IMPLEMENTS, MEMBER_OF, and STEP_IN_PROCESS.

Use a bounded query (LIMIT must be at most 5000):

javascript

search({
  repo: '<repo>',
  action: 'cypher',
  query:
    "MATCH (caller)-[:CodeRelation {type: 'CALLS'}]->(f:Function {name: '<symbol>'}) RETURN caller.name, caller.filePath LIMIT 20",
});

Avoid variable-length Cypher patterns; use impact with maxDepth for traversal.

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