version: "1.0.0" name: deep-security-scan description: Use when the user asks for a deep, exhaustive, multi-pass, or variance-reducing repository-wide Codex Security scan. Run repeated independent repository-wide discovery passes with worker-specific threat models, semantically merge candidates, synthesize one canonical validation threat model, then run validation, attack-path analysis, and final reporting once. Repository-wide targets only; do not use for PRs, commits, branch diffs, working-tree diffs, or scoped paths. metadata: short-description: Run a deeper Codex Security scan

Deep Security Scan

Overview

Deep Security Scan is a higher-recall repository-wide wrapper around Codex Security. It preserves the ordinary Codex Security phase model and final report shape, but repeats the most variance-sensitive phase, finding discovery, before centralized judgment.

The wrapper owns orchestration only:

1. resolve the full-repository scan target once using Codex Security repository-wide semantics
2. run repeated independent discovery workers, each of which generates its own repository-level threat model before $codex-security:finding-discovery
3. semantically merge discovery outputs into one canonical candidate inventory
4. synthesize one canonical validation threat model from the worker threat models after discovery reaches a terminal state
5. run $codex-security:validation, $codex-security:attack-path-analysis, and final report assembly once

Do not replace Codex Security's established scan rules with custom shortcuts.

Required Capabilities

Before starting, confirm that the Codex Security plugin skills needed by this workflow are available:

• $codex-security:security-scan
• $codex-security:threat-model
• $codex-security:finding-discovery
• $codex-security:validation
• $codex-security:attack-path-analysis

If any required skill is unavailable, stop and say that this Codex Security installation does not include the required scan skills. Do not silently degrade into a different workflow.

This workflow also requires parallel delegated workers for repeated discovery. Treat explicit invocation of Deep Security Scan as the user's request for this fanout workflow. If delegation is unavailable in the current environment, do not claim Deep Security Scan ran; explain the limitation and offer an ordinary Codex Security scan as the fallback path.

When delegated discovery workers are spawned from the current scan thread, inherit the parent worker configuration. Do not override agent_type, model, or reasoning effort on a full-history fork; use the host's inherited defaults so the spawn call does not fail before discovery begins.

User-Facing Contract

• The final answer should feel like an ordinary Codex Security result.
• Do not expose discovery rounds, recurrence counts, worker-by-worker results, or merge bookkeeping in the final report unless the user explicitly asks.
• Preserve Codex Security's normal final-report contract and review-directive behavior by using ../../references/final-report.md.
• Keep intermediate artifacts for auditability, but do not dump them into the user-facing result.

Non-Negotiable Orchestration Invariants

These invariants are part of the workflow contract. Do not relax, reinterpret, or replace them with coordinator improvisation.

• exactly 6 usable discovery workers per completed round
• the same canonical discovery brief for every worker, except for mechanical substitutions such as target metadata, round id, worker id, and worker-specific artifact paths
• no themed lanes, candidate-family hints, prior-round novelty hints, or coordinator-added framing around worker prompts
• no shared pre-discovery threat model; each worker must generate and use its own worker-specific repository-level threat model
• the coordinator must create one shared authoritative <discovery_dir>/rank_input.csv plus one exhaustive shared <discovery_dir>/deep_review_input.csv before the first discovery round, and every discovery worker must consume that same shared worklist pair without regenerating, reranking, or overwriting it
• collect all round outputs before merge
• close every completed worker from the round before any later round is spawned
• merge only preserved artifacts from closed workers, never live worker state
• during an active discovery round, the coordinator is orchestration-only: it may resolve paths, create shared worklists, monitor worker progress, verify artifact existence, and check parseability or schema conformance, but it must not perform repository-specific security discovery, sink hunting, candidate generation, or validation prep grounded in target code
• before all six workers in a round have completed and been closed, the coordinator may inspect worker artifacts only for existence, completeness, parseability, and schema conformance; it must not read substantive candidate content or infer emerging vulnerability families from partial-round outputs
• the canonical candidate inventory, novelty comparison, and semantic merge may be derived only from preserved completed worker artifacts collected after a round closes; coordinator-originated repo analysis, side notes, or pre-merge hypotheses are not discovery inputs
• merge candidates only when the merged candidate's remediation would remediate every upstream candidate being merged; if fixing the merged issue would leave any upstream issue independently exploitable, independently reportable, or otherwise materially unresolved, keep them separate
• maintain Codex Security's standard finding_discovery_report.md candidate shape through every merge pass; the merged report is the canonical candidate inventory, not a later summary derived from some other inventory
• every canonical merged candidate must remain present in the merged discovery report passed to validation unless validation itself later rejects it; no candidate may disappear during artifact synthesis or support-artifact consolidation
• every canonical merged candidate must have a standard canonical findings/<candidate_id>/candidate_ledger.jsonl record that names the absorbed worker candidates and ledgers it subsumes before centralized validation begins
• do not spawn a later round until the prior round has fully completed its output collection, worker closure, merge, and novelty comparison
• stop only after a fully completed round produces zero new canonical merged discovery candidates
• an incomplete round, failed spawn, or partial merge is never evidence of saturation
• if the initial worker spawn batch fails before any worker has started because the host cannot resolve the current sender thread, treat that as a transient orchestration failure and retry the full round cleanly rather than treating it as worker failure or partial progress

Shared Setup

1. Read $codex-security:security-scan first and follow its repository-wide scan semantics exactly.
2. Resolve the full-repository target once. Deep Security Scan v0 does not support PR diffs, commits, branch diffs, working-tree diffs, or scoped paths. If the user requested a scoped path, stop this workflow and direct them to ordinary $codex-security:security-scan; if the user requested a PR, commit, branch diff, or working-tree diff, direct them to ordinary $codex-security:security-diff-scan. Do not silently widen the scope.
3. Resolve the ordinary Codex Security scan paths once using its shared artifact-path rules:

• repo_name
• security_scans_dir
• scan_id
• scan_dir
• artifacts_dir
• context_dir
• discovery_dir
• coverage_dir
• reconciliation_dir
• findings_dir

1. Do not generate a shared pre-discovery threat model in the coordinator.
2. Reserve Codex Security's standard per-scan <context_dir>/threat_model.md path for the later canonical validation threat model that will be synthesized only after the discovery loop reaches a terminal state.
3. Create the fixed parent-provided coverage scope before any discovery worker starts:

• generate <discovery_dir>/rank_input.csv once using Codex Security's ordinary deterministic repository-wide worklist helper for the resolved repository
• treat Deep Security Scan as exhaustive for this version: copy every rank_input.csv row into <discovery_dir>/deep_review_input.csv and declare that worklist pair authoritative and exhaustive for every worker
• do not create or require rank_output.csv; repo-wide Deep Security Scan does not use ranked truncation in this version
• every worker must consume those shared standard-path worklists as parent-provided inputs while writing its own worker-local ledgers, candidates, coverage ledger, and discovery report

Do not let individual discovery workers reinterpret the scan target, but do let them independently generate their own repository-level threat models at worker-specific paths before discovery begins.

Deep Discovery Loop

Run discovery in synchronous rounds:

• 6 independent discovery workers per round
• maximum 10 rounds total
• stop after the first full round that adds no new canonical merged discovery candidates of any kind

Always run at least one round.

After each round:

1. collect that round's discovery outputs
2. close every completed discovery worker from that round after its artifacts and summary have been collected
3. merge the closed round's outputs with every prior round's discovery outputs
4. update the canonical candidate inventory
5. compare the canonical inventory against the previous round's canonical inventory
6. stop if no new canonical candidate clusters of any kind were added

Do not keep completed discovery workers open across rounds. Later rounds should consume only the preserved artifacts, not live worker threads. Before spawning any later round, confirm that every completed worker from the prior round has been closed.

While a discovery round is active, keep the coordinator neutral. It may perform orchestration bookkeeping and artifact-health checks, but it must not run its own target-specific discovery lane, form candidate hypotheses, queue likely finding families, or do repository-grounded validation preparation before the round closes.

This stop rule measures discovery saturation only. It does not claim that validated findings or final reportable findings have saturated; validation and report assembly still happen once after the discovery loop completes.

If the first round finds no plausible candidates, write the appropriate canonical no-findings discovery artifact and continue directly to the final Codex Security no-findings assembly path.

Required Round-Transition Checklist

Execute this checklist in order for every completed round. Do not skip steps.

1. confirm the round has exactly six usable completed discovery workers
2. confirm every worker artifact needed for this scan type has been collected under its worker-specific path
3. close all six completed workers from the round
4. confirm there are no remaining completed worker threads from that round still open
5. merge the round's preserved artifacts with prior preserved artifacts into Codex Security's standard discovery-report shape
6. write the merge record, the round-specific candidate inventory, and the canonical merged finding_discovery_report.md
7. compute novelty against the prior canonical candidate inventory
8. choose exactly one next action:

• stop, only if the completed round added zero new canonical clusters of any kind
• spawn the next six-worker round, only after every prior checklist step is complete

Worker Isolation

Each discovery worker must be independent:

• same resolved scan target
• its own independently generated repository-level threat model written to its worker-specific artifact path
• same Codex Security discovery rules
• same canonical worker brief except for mechanical substitutions such as target metadata, round id, worker id, and output paths
• the same parent-provided authoritative <discovery_dir>/rank_input.csv and exhaustive <discovery_dir>/deep_review_input.csv inputs
• no access to prior workers' findings or merge outputs
• no top-level $codex-security:validation, no top-level $codex-security:attack-path-analysis, and no final report assembly
• no file edits

The goal is not shallow parallelism; the goal is independent high-quality discovery diversity from repeated same-brief stochastic passes.

Discovery Worker Brief

Use this canonical brief for every discovery worker. Do not prepend or append extra coordinator prose, skill-path boilerplate, themed emphasis, candidate-family hints, prior-round novelty hints, or coordinator-invented specialty lanes. Only substitute the resolved target details, round id, worker id, and worker-specific output paths required for the run.

Run the Codex Security threat-model phase and then the finding-discovery phase only.
 
Use the provided resolved scan target exactly as given.
First generate your own repository-level threat model for that resolved target using the ordinary `$codex-security:threat-model` rules, but write it only to your worker-specific threat-model output path. Do not read, reuse, overwrite, or infer a shared coordinator threat model.
Then run `$codex-security:finding-discovery` using your own worker-specific repository threat model as the threat-model source of truth.
Do not reinterpret the target, run the top-level `$codex-security:validation` phase, run the top-level `$codex-security:attack-path-analysis` phase, assemble the final report, or edit repository files.
 
Your task is to enumerate technically plausible, distinct security finding candidates as comprehensively as possible for this scope.
 
Apply the ordinary `$codex-security:finding-discovery` rules in full:
- stay grounded in the code and your worker-specific threat model
- preserve separate root causes rather than cosmetic variants
- keep independently reachable instances separate
- preserve concrete source, closest-control, sink, impact, and affected-location evidence
- consume the parent-provided authoritative `<discovery_dir>/rank_input.csv` and exhaustive `<discovery_dir>/deep_review_input.csv` exactly as supplied; do not regenerate, rerank, overwrite, or reinterpret them
- treat those standard-path worklists as shared inputs while writing every worker output only to the explicit worker-specific artifact paths supplied for this discovery pass
- for repository-wide scans, perform the normal Codex Security repo-wide deep-review, seed-research, work-ledger, raw-candidate, candidate-ledger, dedupe, repository-coverage-ledger, and frontier-pass work required by finding discovery
- for repository-wide scans, preserve any candidate-local validation evidence and candidate-local attack-path facts that the current Codex Security discovery workflow requires before dedupe; those receipts are discovery support artifacts, not permission to run the later centralized top-level phases
- for repository-wide worker candidate JSONL, use one canonical machine-readable affected-location shape only:
  - `affected_locations` must be an array of objects
  - every object must contain `label`, `path`, and `lines`
  - `detail` may be included when it materially helps later merge or validation
  - use `lines` as a string even for one line, such as `"154"`
  - do not emit string-only locations such as `"src/file.py:154"`, alternate `file` or `line` keys, or separate-only `source_locations` / `root_locations` / `sink_locations` fields without also materializing the unified `affected_locations` array
 
Return your worker-specific threat model plus the normal discovery artifact set for your worker-specific artifact paths, with enough detail for later centralized semantic merging and validation.

Worker Artifact Layout

Keep the canonical Codex Security scan paths for the final merged pipeline. Put repeated discovery worker artifacts under the canonical artifacts_dir without overwriting one another:

<artifacts_dir>/
  02_discovery/
    rank_input.csv
    deep_review_input.csv
  deep_discovery/
    round-01/
      worker-01/
        threat_model.md
        finding_discovery_report.md
        seed_research.md
        work_ledger.jsonl
        raw_candidates.jsonl
        dedupe_report.md
        deduped_candidates.jsonl
        repository_coverage_ledger.md
        findings/
          <candidate_id>/
            candidate_ledger.jsonl
      worker-02/
        ...
    round-02/
      ...

Workers write their worker-local repository-wide discovery artifact set to their assigned paths while sharing only the standard-path <discovery_dir>/rank_input.csv and exhaustive <discovery_dir>/deep_review_input.csv.

Give each worker explicit worker-specific output paths so the discovery reports and repository-wide ledgers do not overwrite one another.

For repository-wide workers, the machine-readable candidate streams must use this canonical affected-location contract in both raw_candidates.jsonl and deduped_candidates.jsonl:

{
  "affected_locations": [
    {
      "label": "root_control",
      "path": "src/example.py",
      "lines": "154",
      "detail": "Optional concise reason this location matters"
    }
  ]
}

Treat this as a schema contract, not presentation guidance:

• affected_locations is always an array of objects
• label, path, and lines are required on every item
• detail is optional
• lines is always a string, including single-line locations
• do not substitute string-only locations, file, line, or parallel source/root/sink-only arrays in place of the canonical array

Semantic Merge After Each Round

Merge at the level of the underlying actionable candidate, not at the level of title similarity.

Treat two candidates as the same cluster only when a careful security reviewer would consider them the same underlying issue, or when one is a narrower or more specific restatement of the other and keeping both would double-count the same candidate.

Do not merge merely because candidates:

• mention the same subsystem
• share a broad CWE or vulnerability family
• involve the same route family, file family, or helper family
• reuse similar attack language
• have overlapping but materially different exploit paths, broken controls, or affected instances

Remediation-subsumption is required for merge eligibility:

• a merge is valid only when fixing the merged candidate would also fix every upstream candidate being merged
• a merge is invalid when any upstream source/control/sink/impact tuple would remain materially unresolved after the proposed merged fix
• related findings may be cross-referenced or grouped thematically later, but they must remain separate canonical candidates unless they share remediation closure
• example: an authentication bypass and an unsafe path-construction or file-impact bug remain separate if the auth fix does not eliminate the file-impact issue and the file-impact fix does not eliminate the auth bypass

When candidates truly merge:

• keep the strongest title or synthesize a better one
• preserve complementary evidence from every merged member
• preserve distinct affected locations that are part of the same proof tuple
• preserve source/control/sink distinctions that make the claim legible
• keep uncertainty explicit rather than inflating confidence
• produce one stronger canonical candidate than any single member when possible

Use a preserving merge, not a lossy summary:

• the merged candidate should retain any materially useful non-redundant detail from each upstream candidate, including narrower exploit framings, affected subpaths, meaningful preconditions, distinct source/control/sink nuances, and remediation-relevant subcases
• do not reduce dimensionality merely because the topline title becomes broader; if an upstream framing helps validation, advisory/CVE matching, or the later final report, keep that detail visible inside the merged candidate
• synthesize the upstream evidence into one coherent candidate rather than concatenating raw worker prose
• omit only detail that is genuinely duplicative, superseded by a more precise shared framing, or irrelevant after the remediation-subsumption test
• when useful, make the merged candidate explicit that the broader root issue also includes narrower implicated behaviors or subcases inherited from the upstream candidates

When candidates overlap but remain materially distinct, keep them separate.

Canonical Discovery Outputs

After each merge pass, retain:

• a merge record showing which worker candidates were grouped
• the current canonical candidate inventory
• the canonical merged finding_discovery_report.md in Codex Security's normal discovery-report shape
• the novelty comparison against the previous canonical inventory
• the canonical merged candidate set at Codex Security's standard <reconciliation_dir>/deduped_candidates.jsonl path
• a canonical dedupe report at Codex Security's standard <reconciliation_dir>/dedupe_report.md path
• one standard canonical <findings_dir>/<candidate_id>/candidate_ledger.jsonl per merged candidate, recording the discovery provenance, absorbed worker candidate ids, and absorbed worker-ledger paths that justify that canonical candidate
• per-candidate internal provenance:
• first-seen round
• contributing workers and source candidate ids
• later rounds that repeated the same canonical candidate
• whether later evidence strengthened, narrowed, contradicted, or merely repeated the canonical candidate

Suggested placement:

<artifacts_dir>/deep_merge/
  round-01_merge_record.md
  round-01_candidate_inventory.md
  round-02_merge_record.md
  round-02_candidate_inventory.md
  canonical_candidate_inventory.md

Also write and continuously update the canonical merged discovery report at Codex Security's standard final discovery path:

<discovery_dir>/finding_discovery_report.md

This report is not a selective promotion list, triage summary, or second consolidation layer. It is the lossless canonical merged candidate set in the same artifact shape that ordinary $codex-security:finding-discovery would hand to validation.

Validation and later phases must consume this canonical merged discovery report, not the raw per-worker discovery outputs and not a hand-pruned rewrite of the merged set.

Invariant:

• every candidate present in canonical_candidate_inventory.md must also appear substantively in finding_discovery_report.md
• every candidate present in canonical_candidate_inventory.md must also appear in <reconciliation_dir>/deduped_candidates.jsonl and have a canonical <findings_dir>/<candidate_id>/candidate_ledger.jsonl
• finding_discovery_report.md may improve wording, synthesize complementary evidence, and normalize candidate formatting, but it may not drop, suppress, or silently collapse a canonical candidate
• a canonical merged candidate ledger may consolidate worker provenance, but it may not erase the absorbed worker candidate ids, worker-ledger references, or remediation-subsumption decision that explains why the canonical candidate exists
• if the merge layer determines that a prior candidate was semantically subsumed, that merge must already be represented in the canonical merge artifacts; it may not be re-decided during final discovery-report assembly

Repository-Wide Support Artifact Assembly

For repository-wide scans, assemble the worker discovery support artifacts into canonical artifacts before validation. This is repository-wide workflow plumbing for Codex Security's normal downstream phases, not a second semantic merge, candidate triage layer, or reportability filter.

• <discovery_dir>/rank_input.csv
• preserve the shared parent-provided deterministic repo-wide source inventory without worker rewrite
• <discovery_dir>/deep_review_input.csv
• preserve the shared parent-provided exhaustive review scope without worker rewrite
• <context_dir>/seed_research.md
• merge authoritative sources searched, candidate anchors, and failed lookup attempts when seed research applies
• <discovery_dir>/work_ledger.jsonl
• aggregate worker file-review receipts conservatively while preserving worker provenance; do not claim a file was reviewed without an actual worker receipt
• <discovery_dir>/raw_candidates.jsonl
• aggregate worker-local raw candidate objects with round, worker, and source-candidate provenance intact
• <reconciliation_dir>/dedupe_report.md
• record the canonical Deep Security Scan dedupe outcome in Codex Security's standard reconciliation location
• <reconciliation_dir>/deduped_candidates.jsonl
• write the Deep Security Scan canonical merged candidate set in Codex Security's standard post-dedupe location
• <findings_dir>/<candidate_id>/candidate_ledger.jsonl
• write one canonical merged ledger per canonical candidate, preserving absorbed worker candidate ids and worker-ledger references so later centralized phases can append validation and attack-path receipts to the canonical record
• <coverage_dir>/repository_coverage_ledger.md
• merge semantically equivalent ledger rows conservatively
• preserve distinct shards and families separately
• if worker dispositions disagree, keep the more conservative unresolved or open state for centralized validation to settle

Write the canonical consolidated versions back to the numbered standard paths above so $codex-security:validation receives the normal repository-wide inputs it expects.

These support-artifact assemblies are mechanical context assembly only:

• they may union, deduplicate, normalize, and conservatively reconcile support-state metadata
• they may preserve open or unresolved coverage rows for validation to settle
• they must not add a second candidate-selection stage
• they must not suppress, downgrade, or silently omit candidates from the canonical merged finding_discovery_report.md
• they must not treat a support-ledger omission or weaker worker disposition as permission to remove a canonical discovery candidate
• if the assembled repository-wide support artifacts conflict with the canonical merged finding_discovery_report.md, treat that as a consistency problem to repair before validation, not as authority to drop the candidate

Centralized Tail

Enter the centralized tail only after the discovery loop has a recorded terminal state:

• saturated: a fully completed round added zero new canonical clusters of any kind
• capped: the maximum round count was reached while novelty was still appearing

It is not valid to continue into validation, attack-path analysis, or final report assembly merely because:

• the first round produced a strong-looking candidate set
• the coordinator believes the merged inventory is "good enough"
• validation work has already started opportunistically
• the final report would be useful even without a terminal discovery-loop state

Before the centralized tail begins, ensure the discovery artifacts contain the terminal evidence needed to justify it:

• the final completed round's merge record
• the final completed round's candidate inventory
• the canonical candidate inventory after that round
• the canonical merged finding_discovery_report.md, with a one-to-one substantive correspondence to the final canonical candidate inventory
• the canonical <reconciliation_dir>/deduped_candidates.jsonl plus canonical <findings_dir>/<candidate_id>/candidate_ledger.jsonl records aligned one-to-one with the final canonical candidate inventory
• an explicit internal note that the loop ended because it was saturated or capped

If those artifacts or that terminal state are missing, resume the discovery loop or stop with an internal workflow failure. Do not finalize the scan.

Once the recorded terminal state is present:

1. sanity-check the canonical candidate inventory and canonical merged finding_discovery_report.md against the underlying discovery evidence

• remove accidental overclaims
• repair merges that collapsed distinct issues
• ensure affected locations and proof tuples remain concrete
• confirm no canonical candidate disappeared while producing the standard discovery artifact
• confirm <reconciliation_dir>/deduped_candidates.jsonl and the canonical per-candidate ledgers match the same merged candidate set and preserve worker provenance

1. synthesize one canonical validation threat model from the worker threat models and write it to Codex Security's standard per-scan <context_dir>/threat_model.md path

• preserve distinct attacker models, trust boundaries, privileged surfaces, and risk framings that remain relevant to canonical merged candidates
• normalize contradictions conservatively rather than erasing plausible but materially useful threat-model distinctions
• treat this canonical validation threat model as downstream context for validation and attack-path analysis, not as a retroactive filter over the discovery candidate set

1. confirm <context_dir>/threat_model.md exists, then run $codex-security:validation once over the canonical merged discovery inputs
2. run $codex-security:attack-path-analysis once over the surviving validated findings and closure rows that require it
3. assemble the final Codex Security report outputs once using ../../references/final-report.md

Do not bypass validation simply because a candidate recurred across multiple discovery workers. Recurrence is search evidence, not reportability proof.

Final Output Rules

• Emit only the ordinary Codex Security final report outputs and review directives expected for the resolved scan target.
• Write the final report using ../../references/final-report.md, and include both final report paths in the response.
• Keep priorities, severities, confidence, affected locations, validation reasoning, reachability, attack paths, and remediation in the normal Codex Security style.
• Do not mention:
• number of discovery workers
• number of rounds
• candidate recurrence
• semantic cluster ids
• raw novelty metrics
• If no findings survive the centralized pipeline, produce the ordinary Codex Security no-findings report.

Failure Handling

• If Codex Security dependencies are missing, stop early and explain the dependency.
• If delegated workers are unavailable, stop early and explain that Deep Security Scan requires the fanout workflow.
• If a worker fails, preserve its partial artifacts when available, note the failure internally, and retry or replace only that worker until the round has six usable completed discovery passes.
• Do not count an incomplete round as a no-novelty round.
• Do not reduce the round below six usable workers to keep moving.
• Do not proceed to merge or novelty comparison on partial worker completion.
• Do not reinterpret failed spawning, worker crashes, or missing artifacts as evidence that the candidate space is exhausted.
• Do not enter validation, attack-path analysis, or final report assembly until the discovery loop has recorded a terminal state of saturated or capped.
• If the first discovery round adds any new canonical clusters, a later round is mandatory unless the maximum round cap has already somehow been reached.
• Do not stop simply because a new candidate looks weak, low-confidence, non-reportable, or likely to close in validation. Any genuinely new canonical discovery candidate keeps the loop open until the next merge determines whether novelty persists.
• Treat missing per-round merge records, missing per-round candidate inventories, or missing terminal-state bookkeeping as a workflow failure, not as permission to finalize early.
• Treat any mismatch between canonical_candidate_inventory.md and finding_discovery_report.md as a workflow failure. The discovery report may refine merged prose, but it may not omit canonical candidates before validation.
• Treat any mismatch among canonical_candidate_inventory.md, <discovery_dir>/finding_discovery_report.md, <reconciliation_dir>/deduped_candidates.jsonl, and canonical per-candidate ledgers as a workflow failure. Centralized validation must receive one coherent canonical candidate set.
• For repository-wide scans, treat malformed worker affected_locations output as a worker-artifact defect that must be repaired before semantic merge. Lossless mechanical normalization is acceptable only for trivial equivalent variants such as line -> lines or file -> path; string-only locations or alternate location inventories that cannot be mapped without interpretation are incomplete worker outputs, not merge inputs.
• Treat coordinator-authored target-specific candidate hypotheses, sink hunts, or partial-round substantive worker-result interpretation as orchestration drift to stop and correct before merge; those outputs are not eligible discovery evidence and must not influence novelty, dedupe, or validation inputs.
• Do not mutate later worker prompts based on prior findings, suspected blind spots, or earlier novelty observations.
• If the first worker-spawn batch fails before any worker starts with a sender-thread lookup error such as no thread with id, preserve the clean pre-round state, retry the full round once with the same canonical worker brief, and do not count the failed attempt toward round progress.
• If a later round cannot spawn because worker-thread capacity is exhausted, first close completed workers whose artifacts have already been collected, then retry the spawn once.
• If the thread-capacity retry still cannot produce a complete six-worker round, preserve the gathered state and explain that Deep Security Scan could not complete the configured discovery loop normally. Do not silently reduce the round size or claim novelty collapse occurred.
• If the maximum of ten rounds is reached while new candidate clusters are still appearing, continue to the centralized validation pipeline with the best canonical inventory gathered so far. Do not claim novelty collapse occurred.

Guardrails

• Do not edit repository files during scanning.
• Do not collapse the Codex Security phases together.
• Do not let discovery workers see one another's results.
• Do not let repeated speculative phrasing turn into a reportable issue without centralized validation.
• Do not merge away independently reachable vulnerable instances that Codex Security would normally keep separate.