qsong-github/drugclaw/drugcomb

Claude Code and agent skill by qsong-github/drugclaw

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Query the DrugComb drug combination database for cancer cell-line synergy and sensitivity data. Use whenever the user asks about drug combinations, synergy scores (ZIP/Bliss/Loewe/HSA), combination sensitivity (CSS), or wants to look up how two drugs interact in a specific cancer cell line.

Install

npx vskill@latest install qsong-github/drugclaw/drugcomb

SKILL.md

The same SKILL.md was published earlier as gabrielmoreira/agent-skills-mirror/drugcomb.

DrugComb Query Skill

Search DrugComb summary records by any entity. Auto-detects type by pattern:

Input PatternDetected AsMatch Logic
5-FU / imatinibdrug namecase-insensitive substring on drug_row OR drug_col
A549 / MCF-7cell linecase-insensitive substring on cell_line_name
12345 (pure digits)block_idexact on block_id
CID:2244PubChem CIDexact on drug_row_cid OR drug_col_cid

API

FunctionInputReturns
load_drugcomb(path)CSV pathlist[dict]
columns(data)loaded datacolumn name list
search(data, entity)single entity stringlist[dict]
search_batch(data, entities)list of entity stringsdict[str, list[dict]]
summarize(hits, entity)hit list + labelcompact LLM-readable text
to_json(hits)hit listlist[dict]

Usage

See if __name__ == "__main__" block in example.py for runnable examples covering: drug name search, cell-line search, batch search, and JSON output.

Data

  • Source: DrugComb normalized full-package output
  • Key columns: drug_row, drug_col, cell_line_name, synergy_zip, synergy_bliss
  • Path: resources_metadata/drug_combination/DrugComb/drugcomb.csv

Citation

Zagidullin B, Aldahdooh J, Zheng S, et al. DrugComb: an integrative cancer drug combination data portal. Nucleic Acids Res. 2019;47(W1):W43–W51. doi:10.1093/nar/gkz337

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