r2ascension/skill_repo/bio-clip-seq-clip-motif-analysis

Trust tier 3
  • community
Source check pending

Checking that the SKILL.md file is still in the repository.

Identify enriched sequence motifs at CLIP-seq binding sites for RBP binding specificity. Use when characterizing the sequence preferences of an RNA-binding protein.

Install

npx vskill@latest install r2ascension/skill_repo/bio-clip-seq-clip-motif-analysis

SKILL.md

The same SKILL.md was published earlier as freedomintelligence/openclaw-medical-skills/bio-clip-seq-clip-motif-analysis.

CLIP Motif Analysis

HOMER De Novo Motifs

bash
# Extract sequences from peaks
bedtools getfasta -fi genome.fa -bed peaks.bed -fo peaks.fa
 
# Find enriched motifs
findMotifs.pl peaks.fa fasta output_dir \
    -len 6,7,8 \
    -rna

MEME-ChIP

bash
meme-chip -oc output_dir \
    -dna \
    peaks.fa

Known Motif Enrichment

bash
# HOMER known motif scan
findMotifs.pl peaks.fa fasta output_dir \
    -rna \
    -known

Related Skills

  • clip-peak-calling - Get peaks
  • chip-seq/motif-analysis - General motif concepts

<!-- AUTHOR_SIGNATURE: 9a7f3c2e-MD-BABU-MIA-2026-MSSM-SECURE -->

Security

  • Security scanPassed, 95 of 100Pattern checks on the skill's files.
  • Model reviewPassed

See the full security report

Quality evaluation

  • Task evaluationNot runNo evaluation yet. Run one in Skill Studio.

See evaluation results

Source

Popularity

7-day trend score
5

Not refreshed yet.

Works with

Any agent vskill installs to: 56 targets in all. These 39 have a page on this site.

  • Claude Code
  • Cursor
  • GitHub Copilot
  • Windsurf
  • Codex
  • Gemini CLI
  • Cline
  • Amp
  • Roo Code
  • Goose
  • Continue
  • Kilo Code
  • Junie
  • Trae
  • OpenHands
  • Qwen Code
  • AI Agent
  • Tabnine Chat
  • Sourcegraph Cody
  • Amazon Q
  • Firebase Genkit
  • Sweep
  • Devin
  • Phind
  • Mentat
  • Claude Desktop
  • Aider
  • GPT Pilot
  • Plandex
  • bolt.new
  • v0
  • Replit Agent
  • Anse
  • TypingMind
  • BetterChatGPT
  • LibreChat
  • Warp AI
  • Pieces
  • Fig AI
Embed badge
vskill VERIFIED badge
[![vskill VERIFIED](https://verified-skill.com/api/v1/skills/r2ascension/skill_repo/bio-clip-seq-clip-motif-analysis/badge)](https://verified-skill.com/skills/r2ascension/skill_repo/bio-clip-seq-clip-motif-analysis)

Something wrong with this skill or its page? Tell us.