runchuan-bu/bioclaw/bio-manuscript-text

bio-manuscript-text

Step 7: Manuscript drafting (论文文案生成)

Draft the main manuscript text from the figure plan, metric system, and analysis system.

Purpose

1. Write the Introduction
2. Draft the Results around the figure logic
3. Draft the Discussion
4. Draft the Methods skeleton

Input Format

topic: [research topic]
figure_designs: [figure design document]
innovation: [innovation summary]
base_work: [related prior work]
metric_system: [metric system]
analysis_system: [analysis system]
paper_count: [number of related papers]
related_papers: [optional list]
target_journal: [target journal]

Workflow

Step 7.1: Write the Introduction

Use a five-paragraph structure:

1. field background
2. related work
3. limitations of current methods
4. introduce the proposed method
5. significance and broader impact

Step 7.2: Write the Results

Organize the Results around figure order:

• Figure 1: framework / method overview
• Figure 2-N: one main task or claim per figure

For each figure section, explain:

• setup
• quantitative findings
• qualitative or biological findings
• take-home message

Step 7.3: Write the Discussion

Cover:

• method strengths
• comparison to prior methods
• biological implications
• limitations
• future directions

Step 7.4: Write the Methods skeleton

Include at minimum:

• preprocessing
• model architecture
• training strategy
• metrics
• biological analyses
• baselines

Output Format

# Manuscript Text
 
## INTRODUCTION
### Paragraph 1: Field background
### Paragraph 2: Related work
### Paragraph 3: Current limitations
### Paragraph 4: Our method
### Paragraph 5: Significance
 
## RESULTS
### 2.1 Framework overview
### 2.2 Task 1 / Figure 2
### 2.3 Task 2 / Figure 3
### 2.4 Task 3 / Figure 4
### 2.5 Task 4 / Figure 5
 
## DISCUSSION
-strengths
-comparisons
-biological implications
-limitations
-future work
 
## METHODS
-preprocessing
-model
-training
-metrics
-biological analyses
-baselines

Writing Principles

1. Make the manuscript track the figure logic.
2. Keep claims tied to evidence.
3. Separate technical and biological claims clearly.
4. Prefer reviewer-friendly clarity over stylistic complexity.

Usage

/bio-manuscript-text "topic: spatial multi-omics integration | figure_designs: [...] | innovation: [...] | base_work: [...] | paper_count: 5 | target_journal: nat-communications"

Notes

1. Do not draft text before the figure logic is stable.
2. Every Results subsection should map to a figure.
3. Keep Methods detailed enough that later implementation planning remains consistent.