yjh051108/mmkit/comp-paper-en

cat _utils/writing_rules.md 2>/dev/null || cat skills/shared-scripts/writing_rules.md

Summary Sheet (1 page — most important page in the entire paper)
Table of Contents
1. Introduction (1-2 pages)
2. Assumptions and Justifications (0.5 page)
3. Notations (0.5 page)
4. Model Design and Solution (per sub-problem, 4-5 pages each)
5. Sensitivity Analysis (1-2 pages)
6. Model Evaluation (Strengths + Weaknesses)
7. Conclusions (0.5 page)
References
Appendix A: Code

MODE=$(grep -q "Word（.docx）\|docx mode" CLAUDE.md 2>/dev/null && echo docx || echo pdf)
PASS=true
if [ "$MODE" = "docx" ]; then
    [ -f paper/main.md ] && SZ=$(wc -c < paper/main.md) || SZ=0
    [ "$SZ" -ge 5120 ] && echo "✅ paper/main.md ($SZ)" || { echo "❌ paper/main.md missing"; PASS=false; }
else
    [ -f paper/main.tex ] && SZ=$(wc -c < paper/main.tex) || SZ=0
    [ "$SZ" -ge 5120 ] && echo "✅ paper/main.tex ($SZ)" || { echo "❌ paper/main.tex missing"; PASS=false; }
    SECT_COUNT=$(ls paper/sections/*.tex 2>/dev/null | wc -l)
    [ "$SECT_COUNT" -ge 3 ] && echo "✅ sections ($SECT_COUNT)" || { echo "❌ too few sections"; PASS=false; }
fi
[ "$PASS" != true ] && echo "⛔ Output verification FAILED — must complete before ending"

echo "=== Resume check ==="
if [ -d "paper/sections" ]; then
    for f in paper/sections/*.tex; do
        [ -f "$f" ] || continue
        chars=$(wc -c < "$f")
        [ "$chars" -lt 500 ] && echo "⚠ Placeholder: $(basename $f) ($chars chars)" || echo "✅ Complete: $(basename $f) ($chars chars)"
    done
fi

mkdir -p paper/sections
TMPL_BASE="_templates"
[ -d "$TMPL_BASE" ] || TMPL_BASE="templates"
 
if echo "$ARGUMENTS" | grep -qi "mcm\|MCM\|ICM" || grep -qi "mcm\|MCM" CLAUDE.md 2>/dev/null; then
    echo "Using MCM template"
    cp "$TMPL_BASE/mcm/"* paper/ 2>/dev/null
elif echo "$ARGUMENTS" | grep -qi "apmcm\|APMCM\|亚太" || grep -qi "apmcm" CLAUDE.md 2>/dev/null; then
    echo "Using APMCM template"
    cp "$TMPL_BASE/apmcm/"* paper/ 2>/dev/null
else
    echo "Using default English template"
    cp "$TMPL_BASE/default/"* paper/ 2>/dev/null
fi
[ -f paper/main.tex ] && echo "Template copied: $(wc -l < paper/main.tex) lines" || echo "ERROR: template not found!"

echo "=== Available PDF figures ==="
ls -la figures/*.pdf 2>/dev/null || echo "No PDF figures found"
echo ""
echo "=== Available table files (PDF mode: .tex / Word mode: .md) ==="
ls -la figures/TABLE_*.tex figures/TABLE_*.md 2>/dev/null || echo "No TABLE files found"
echo ""
echo "=== latex_includes.tex content (figure→PDF mapping) ==="
cat figures/latex_includes.tex 2>/dev/null || echo "No latex_includes.tex"
echo ""
echo "=== TikZ geometry/algorithm/architecture diagrams ==="
# TikZ generated by paper-figure as figures/tikz_diagrams.tex → compiled to figures/tikz_diagrams.pdf
# (legacy name tikz_architecture_examples.tex also accepted). Their \includegraphics blocks are in latex_includes.tex.
ls figures/tikz_*.pdf 2>/dev/null && echo "→ TikZ present, must embed" || echo "No TikZ diagrams"

FIGURE EMBEDDING PLAN:
1. fig_p1_result.pdf → Problem 1 section → caption: "Figure X: ..."
2. fig_p2_result.pdf → Problem 2 section → caption: "Figure X: ..."
3. TABLE_comparison.tex → Results section → caption: "Table X: ..."
4. tikz_diagrams.pdf (geometry/algorithm/architecture TikZ, from latex_includes.tex) → Introduction/Model section

echo "=== DrawIO/TikZ embedding check ==="
for pdf in figures/fig_roadmap.pdf figures/fig_flow_*.pdf figures/fig_pipeline*.pdf figures/fig_framework*.pdf; do
    [ -f "$pdf" ] || continue
    bn=$(basename "$pdf")
    grep -rq "$bn" paper/sections/*.tex paper/main.tex 2>/dev/null && echo "✅ $bn embedded" || echo "❌ $bn NOT embedded — fix now!"
done
# ⛔ TikZ check by PDF filename (most reliable)
for tpdf in figures/tikz_diagrams.pdf figures/tikz_diagrams_*.pdf figures/tikz_*.pdf; do
    [ -f "$tpdf" ] || continue
    tbn=$(basename "$tpdf")
    grep -rq "$tbn" paper/sections/*.tex paper/main.tex 2>/dev/null && echo "✅ TikZ $tbn embedded" || echo "❌ TikZ $tbn NOT embedded — fix now!"
done

grep -oh '\\label{[^}]*}' figures/*.tex 2>/dev/null | sort -u > _tmp/all_fig_labels.txt
grep -oh '\\label{[^}]*}' paper/sections/*.tex paper/main.tex 2>/dev/null | sort -u > _tmp/embedded_labels.txt
comm -23 _tmp/all_fig_labels.txt _tmp/embedded_labels.txt  # should be empty

PYTHON=$(command -v python3 2>/dev/null || command -v python 2>/dev/null)
mkdir -p _tmp
# Search for real papers in your topic areas (adapt queries to your paper)
# Example:
#   $PYTHON "$SCHOLAR_SCRIPT" bibtex "your core method keywords" --max 5
#   $PYTHON "$SCHOLAR_SCRIPT" bibtex "your research domain keywords" --max 5

1_introduction.tex  — Problem background + restatement + approach overview
2_assumptions.tex   — Assumptions and justifications
3_symbols.tex       — Notation table (use non-floating table: \begin{center}\begin{tabular}, NOT \begin{table})
4_model.tex         — Model development (or split per sub-problem)
5_results.tex       — Results and analysis
6_sensitivity.tex   — Sensitivity analysis
7_strengths.tex     — Strengths and weaknesses
A_code.tex          — Appendix: code

chars=$(wc -c < "paper/sections/current_chapter.tex")
echo "Current chapter: $chars chars"
# English LaTeX ≈ 2000-2500 chars/page
# If sub-problem chapter expected 4 pages but only 4000 chars (~2 pages), expand immediately