zaoqu-liu/scienceclaw/biorxiv-search

BIORXIV_SCRIPT=$(find ~/.claude/plugins/cache -name "search" -path "*/biorxiv-search/*/scripts/*" -type f 2>/dev/null | head -1)

$BIORXIV_SCRIPT "CRISPR gene editing" 15

User: Search bioRxiv for CRISPR advances
→ Response: {"success": false, "setup_required": true, ...}
→ Claude asks: "Please provide your Valyu API key from https://platform.valyu.ai"
→ User: "val_abc123..."
→ Claude runs: scripts/search setup val_abc123...
→ Response: {"success": true, "type": "setup", ...}
→ Claude retries: scripts/search "CRISPR advances" 10
→ Success!

{
  "success": true,
  "type": "biorxiv_search",
  "query": "CRISPR gene editing",
  "result_count": 10,
  "results": [
    {
      "title": "Article Title",
      "url": "https://biorxiv.org/content/...",
      "content": "Full article text with figures...",
      "source": "biorxiv",
      "relevance_score": 0.95,
      "images": ["https://example.com/figure1.jpg"]
    }
  ],
  "cost": 0.025
}

# Get article titles
scripts/search "query" 10 | jq -r '.results[].title'
 
# Get URLs
scripts/search "query" 10 | jq -r '.results[].url'
 
# Extract full content
scripts/search "query" 10 | jq -r '.results[].content'

# Find recent molecular biology papers
scripts/search "protein-protein interaction networks" 50

# Search for neuroscience research
scripts/search "optogenetics in behavior studies" 20

# Find genomics papers
scripts/search "single cell RNA sequencing analysis" 15

# Search for developmental biology papers
scripts/search "embryonic stem cell differentiation" 25

{
  "success": false,
  "error": "Error message"
}

scripts/
├── search          # Bash wrapper
└── search.mjs      # Node.js CLI

from valyu import Valyu
client = Valyu(api_key="your-api-key")
response = client.search(
    query="your search query here",
    included_sources=["valyu/valyu-biorxiv"],
    max_results=20
)
for result in response["results"]:
    print(f"Title: {result['title']}")
    print(f"URL: {result['url']}")
    print(f"Content: {result['content'][:500]}...")

import { Valyu } from "valyu-js";
const client = new Valyu("your-api-key");
const response = await client.search({
  query: "your search query here",
  includedSources: ["valyu/valyu-biorxiv"],
  maxResults: 20
});
response.results.forEach((result) => {
  console.log(`Title: ${result.title}`);
  console.log(`URL: ${result.url}`);
  console.log(`Content: ${result.content.substring(0, 500)}...`);
});