eightmm

eightmm/codex-science

Autonomously improve a real artifact (code, training recipe, agent harness, data pipeline, prompt) against an objective and an eva...

Query the CZ CELLxGENE Census programmatically for versioned public single-cell and spatial transcriptomics data. Use when you nee...

Molecular ML with diverse featurizers and pre-built datasets. Use for property prediction (ADMET, toxicity) with traditional ML or...

Extract cognitive patterns and thinking fingerprints from any text. Use this skill when the user wants to analyze how someone thin...

Python library for working with geospatial vector data including shapefiles, GeoJSON, and GeoPackage files. Use when working with ...

Submit and manage protocols on Ginkgo Bioworks Cloud Lab (cloud.ginkgo.bio), a web-based interface for autonomous lab execution on...

Query and download public cancer imaging data from NCI Imaging Data Commons using idc-index. Use for accessing large-scale radiolo...

MATLAB and GNU Octave numerical computing for matrix operations, data analysis, visualization, and scientific computing. Use when ...

GPU-accelerate Python code using CuPy, Numba CUDA, Warp, cuDF, cuML, cuGraph, KvikIO, cuCIM, cuxfilter, cuVS, cuSpatial, and RAFT....

Run pathway and gene-set enrichment analysis on gene lists or ranked gene data, then interpret the results. Use whenever the user ...

Structured manuscript/grant review with checklist-based evaluation. Use when writing formal peer reviews with specific criteria me...

Python library for working with DICOM (Digital Imaging and Communications in Medicine) files. Use this skill when reading, writing...

Build slide decks and presentations for research talks. Use this for making PowerPoint slides, conference presentations, seminar t...

eightmm/codex-science

Model interpretability and explainability using SHAP (SHapley Additive exPlanations). Use this skill when explaining machine learn...

Access a collection of open-source molecular design and structural biology tools on the Tamarind Bio platform, via its REST API or...

eightmm/codex-science

Query the OpenAlex scholarly graph for works, authors, institutions, sources, topics, and funders; resolve DOIs; and aggregate bib...

eightmm/codex-science

Find ontology-aware healthy wild-type gene expression context with Bgee. Use for cross-species, anatomical, developmental-stage, o...

Normalize genes, proteins, variants, diseases, phenotypes, compounds, reactions, tissues, cell types, organisms, studies, and acce...

eightmm/codex-science

eightmm/codex-science

eightmm/codex-science

Run reproducible AlphaFold2 monomer or multimer inference with pinned code, parameters, sequence databases, template cutoff, and s...

Search arXiv preprints for a topic, author, or concept and triage the results. Use when the user wants recent primary literature, ...

Construct and validate asymptotic and perturbative approximations. Use for dominant balance, regular or singular perturbations, bo...

Predict 3D biomolecular structures and binding affinity with the open-source Boltz model — proteins, complexes, nucleic acids, and...

eightmm/codex-science