eightmm/codex-science/kdense-tamarind
Claude Code and agent skill by eightmm/codex-science
- community
Checking that the SKILL.md file is still in the repository.
Access a collection of open-source molecular design and structural biology tools on the Tamarind Bio platform, via its REST API or MCP server — no local GPUs required. Tamarind bundles popular open-source models for structure prediction (AlphaFold, Boltz, Chai, ESMFold), protein, binder, and de novo design (RFdiffusion, ProteinMPNN, BoltzGen), antibody and nanobody design and developability, protein-ligand docking (DiffDock, Autodock Vina), binding-affinity prediction, MSA generation, and molec…
Install
npx vskill@latest install eightmm/codex-science/kdense-tamarindSKILL.md
Kdense Tamarind
Use this Codex adapter for the pinned upstream scientific skill.
Catalog status
- Status:
inactive - Source:
kdense - Audit reasons:
credentials-required - Upstream license:
MIT - Inventory:
../../inventory.json - Upstream instructions:
../../../vendor/scientific-agent-skills/skills/tamarind/SKILL.md
Procedure
- Resolve the plugin root as three directories above this skill directory.
- Run
"<plugin-root>/scripts/python_runtime.sh" "<plugin-root>/scripts/search_skills.py" --name kdense-tamarindand verify the record's status, reasons, and source path and the source's pinned commit (empty for first-partycxskills) from its output instead of readinginventory.json. - Do not read the upstream instructions until the user has seen every audit reason and given explicit acknowledgement. Acknowledgement permits instruction inspection only.
- Treat upstream frontmatter as source metadata, not as Codex configuration. Follow the instruction body only where it is compatible with available Codex tools and the current user-approved plan.
- Treat tools named for another agent runtime as capability requests. Map them to an available Codex tool only when the behavior is equivalent; otherwise report the unavailable capability.
- Ask before credentials, package installation, new network hosts, remote compute, writes, paid services, destructive actions, or imported executable code.
- Use
$science-provenancefor produced scientific outputs and$science-reviewbefore presenting scientific claims.
Boundaries
- This wrapper does not grant credentials, network access, package installation, or script execution.
- Do not change an inactive record to active from inside a research task.
- Preserve failures, uncertainty, source identifiers, and licensing constraints.
Security
- Security scanPassed, 100 of 100Pattern checks on the skill's files.
- Model reviewNot runA model review is scheduled for the next rescan.
Quality evaluation
- Task evaluationNot runNo evaluation yet. Run one in Skill Studio.
Source
- SKILL.md in the repositoryCheckingcatalog/codex-skills/kdense-tamarind/SKILL.md
Popularity
- Repository stars
- 3
- 7-day trend score
- 12
Stars and forks are for the whole GitHub repository, not this skill alone. Not refreshed yet.
Works with
Any agent vskill installs to: 56 targets in all. These 39 have a page on this site.
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