anthropics/knowledge-work-plugins/scvi-tools

Deep learning for single-cell analysis using scvi-tools. This skill should be used when users need (1) data integration and batch correction with scVI/scANVI, (2) ATAC-seq analysis with PeakVI, (3) CITE-seq multi-modal analysis with totalVI, (4) multiome RNA+ATAC analysis with MultiVI, (5) spatial transcriptomics deconvolution with DestVI, (6) label transfer and reference mapping with scANVI/scArches, (7) RNA velocity with veloVI, or (8) any deep learning-based single-cell method. Triggers include mentions of scVI, scANVI, totalVI, PeakVI, MultiVI, DestVI, veloVI, sysVI, scArches, variational autoencoder, VAE, batch correction, data integration, multi-modal, CITE-seq, multiome, reference mapping, latent space.

# npm
$ npx vskill@latest install anthropics/knowledge-work-plugins/scvi-tools

# bun
$ bunx vskill@latest install anthropics/knowledge-work-plugins/scvi-tools

# pnpm
$ pnpx vskill@latest install anthropics/knowledge-work-plugins/scvi-tools

# yarn
$ yarn dlx vskill@latest install anthropics/knowledge-work-plugins/scvi-tools

# alternative
$ npx vskill@latest install anthropics/knowledge-work-plugins --skill scvi-tools

Works with all 39 vskill-compatible agents

Claude CodeCursorGitHub CopilotWindsurfCodexGemini CLIClineAmp

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